STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycf53Ycf53 protein; ORF_ID:tlr1594; hypothetical protein. (235 aa)    
Predicted Functional Partners:
ppa
Soluble inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
      
 0.878
tlr1593
Tlr1593 protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
       0.785
ycf49
Ycf49 protein; ORF_ID:tlr1437; hypothetical protein.
  
     0.773
tlr1592
Branched-chain amino acid ABC transporter permease protein; ORF_ID:tlr1592; Belongs to the binding-protein-dependent transport system permease family.
       0.773
psbW
Photosystem II reaction center W protein; ORF_ID:tlr0493; Belongs to the Psb28 family.
  
     0.771
ycf36
Ycf36 protein; ORF_ID:tll1063; hypothetical protein.
  
     0.771
tsr2284
ORF_ID:tsr2284; hypothetical protein.
  
     0.769
tll2476
ORF_ID:tll2476; hypothetical protein.
  
     0.769
tlr2140
ORF_ID:tlr2140; hypothetical protein.
  
     0.765
psaE
Photosystem I subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.759
Your Current Organism:
Thermosynechococcus elongatus
NCBI taxonomy Id: 197221
Other names: T. elongatus BP-1, Thermosynechococcus elongatus BP-1, Thermosynechococcus elongatus IAM M-273, Thermosynechococcus elongatus NIES-2133, Thermosynechococcus elongatus str. BP-1, Thermosynechococcus elongatus strain BP-1
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