STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODC03787.1Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)    
Predicted Functional Partners:
ODC05347.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.992
ODC03657.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
ODC03786.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.971
ODC03785.1
Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.938
ODC03889.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.923
ODC05356.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.921
ODC03461.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.897
ODC03168.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.889
ODC03462.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.828
ODC05230.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.827
Your Current Organism:
Terasakiispira papahanaumokuakeensis
NCBI taxonomy Id: 197479
Other names: ATCC BAA-995, DSM 16455, DSM 23961, Halomonadaceae bacterium PH27A, T. papahanaumokuakeensis, Terasakiispira papahanaumokuakeensis Zepeda et al. 2015, strain PH27A
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.