STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARJ49449.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)    
Predicted Functional Partners:
ARJ49450.1
Glycine/betaine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
ARJ49446.1
Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.981
ARJ49479.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.978
ARJ49563.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.978
ARJ49560.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.977
ARJ49480.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.934
ARJ49451.1
Cytochrome oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ARJ49447.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.586
ARJ49448.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.586
ARJ48624.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.440
Your Current Organism:
Pelagibacter sp. RS40
NCBI taxonomy Id: 1977865
Other names: C. Pelagibacter sp. RS40, Candidatus Pelagibacter sp. RS40
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.