STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARJ49744.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (253 aa)    
Predicted Functional Partners:
ARJ49736.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ARJ49737.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ARJ49738.1
MBL fold hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ARJ49739.1
Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.773
ARJ49741.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.773
ARJ49743.1
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
       0.773
ARJ49745.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ARJ49746.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
Your Current Organism:
Pelagibacter sp. RS40
NCBI taxonomy Id: 1977865
Other names: C. Pelagibacter sp. RS40, Candidatus Pelagibacter sp. RS40
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