OTG84359.1 protein (Acinetobacter sp. ANC5054)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OTG84359.1

Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)

Predicted Functional Partners:

OTG84361.1

0.584

OTG84630.1

0.544

OTG84360.1

0.540

OTG79748.1

0.483

OTG84362.1

0.438

Your Current Organism:

Acinetobacter sp. ANC5054

NCBI taxonomy Id: 1977877
Other names: A. sp. ANC 5054, Acinetobacter sp. ANC 5054

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OTG79748.1	OTG84359.1	B9T33_11465	B9T33_00755	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
OTG79748.1	OTG84630.1	B9T33_11465	B9T33_00750	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
OTG84359.1	OTG79748.1	B9T33_00755	B9T33_11465	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
OTG84359.1	OTG84360.1	B9T33_00755	B9T33_00760	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
OTG84359.1	OTG84361.1	B9T33_00755	B9T33_00765	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
OTG84359.1	OTG84362.1	B9T33_00755	B9T33_00770	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
OTG84359.1	OTG84630.1	B9T33_00755	B9T33_00750	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
OTG84360.1	OTG84359.1	B9T33_00760	B9T33_00755	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
OTG84360.1	OTG84361.1	B9T33_00760	B9T33_00765	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
OTG84360.1	OTG84362.1	B9T33_00760	B9T33_00770	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
OTG84361.1	OTG84359.1	B9T33_00765	B9T33_00755	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
OTG84361.1	OTG84360.1	B9T33_00765	B9T33_00760	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
OTG84361.1	OTG84362.1	B9T33_00765	B9T33_00770	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
OTG84362.1	OTG84359.1	B9T33_00770	B9T33_00755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
OTG84362.1	OTG84360.1	B9T33_00770	B9T33_00760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
OTG84362.1	OTG84361.1	B9T33_00770	B9T33_00765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
OTG84630.1	OTG79748.1	B9T33_00750	B9T33_11465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
OTG84630.1	OTG84359.1	B9T33_00750	B9T33_00755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544