STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI33897.1CMP-N-acetylneuraminic acid synthetase. (232 aa)    
Predicted Functional Partners:
SHI33865.1
Phosphoglycolate phosphatase, HAD superfamily.
 
     0.821
SHI33932.1
Hypothetical protein.
       0.773
SHI33838.1
4-hydroxy 2-oxovalerate aldolase.
 
     0.740
SHJ30797.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.695
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family.
    
  0.585
SHI82302.1
Flagellar basal-body rod protein FlgF.
   
   0.567
SHI56607.1
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); Belongs to the KdsB family.
    
  0.553
SHI33961.1
Uncharacterized conserved protein, DUF1800 family.
       0.526
SHI33993.1
Uncharacterized conserved protein, DUF1501 family.
       0.526
SHJ07605.1
MobA-like NTP transferase domain-containing protein.
  
  
 0.510
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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