STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI34412.1Glycosyl transferases group 1. (343 aa)    
Predicted Functional Partners:
SHI34448.1
Asparagine synthase (glutamine-hydrolysing).
 
     0.944
SHI34353.1
ADP-heptose:LPS heptosyltransferase.
 
  
 0.926
SHI34381.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.876
SHK22720.1
ADP-heptose:LPS heptosyltransferase.
  
  
 0.691
SHI34318.1
Hypothetical protein; Belongs to the GcvT family.
       0.634
SHI34475.1
Hypothetical protein.
    
  0.572
SHJ81152.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
    
 0.564
SHJ92038.1
Asparagine synthase (glutamine-hydrolysing).
 
     0.560
SHJ08978.1
Hypothetical protein.
    
 
 0.551
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.544
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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