STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI58142.1Cellulose synthase operon protein YhjQ. (272 aa)    
Predicted Functional Partners:
SHI58209.1
Tetratricopeptide repeat-containing protein.
 
     0.937
SHI58179.1
Cellulose synthase (UDP-forming).
 
  
 0.923
SHI58102.1
Hypothetical protein.
       0.773
SHJ00098.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.747
SHI90234.1
Tetratricopeptide repeat-containing protein.
  
     0.729
SHK20210.1
Tetratricopeptide repeat-containing protein.
  
     0.727
SHJ42365.1
Chromosome partitioning protein, ParB family.
  
 
 0.712
SHI32742.1
Vitamin B12 transporter.
  
 
   0.689
SHK20169.1
Cellulose synthase subunit D.
 
   
 0.673
SHK20240.1
Cellulose synthase (UDP-forming).
 
  
 0.673
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.