STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI59794.1Tripartite-type tricarboxylate transporter, receptor component TctC. (325 aa)    
Predicted Functional Partners:
SHJ54266.1
TctA family transporter.
  
    0.789
SHJ28774.1
Putative tricarboxylic transport membrane protein.
  
    0.680
SHK15566.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
     0.643
SHI59837.1
L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.550
SHI59867.1
D-galactarate dehydratase / Altronate hydrolase, C terminus.
       0.550
SHI59892.1
D-galactarate dehydratase / Altronate hydrolase, C terminus.
       0.550
SHI59925.1
Transcriptional regulator, TetR family.
       0.511
SHI59975.1
6-hydroxynicotinate 3-monooxygenase.
       0.498
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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