STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI78601.1Predicted secreted protein. (86 aa)    
Predicted Functional Partners:
SHK14120.1
Protein of unknown function.
  
     0.676
SHJ46737.1
Protein of unknown function.
  
     0.644
SHI34184.1
Protein of unknown function.
  
     0.639
SHI32832.1
Protein of unknown function.
  
     0.588
SHK08963.1
Uncharacterized protein involved in outer membrane biogenesis.
  
     0.570
SHK37698.1
Uncharacterized conserved protein, heparinase superfamily.
  
     0.567
SHI78631.1
Hypothetical protein.
       0.550
SHI96114.1
Methyltransferase domain-containing protein.
  
     0.550
SHJ88097.1
Ribosomal protein S18 acetylase RimI.
  
     0.547
SHI39003.1
ArsR family transcriptional regulator.
  
     0.524
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.