STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI80380.1Uncharacterized conserved protein YcbK, DUF882 family. (197 aa)    
Predicted Functional Partners:
SHI80407.1
Murein L,D-transpeptidase YcbB/YkuD.
 
     0.953
SHK05920.1
L,D-transpeptidase catalytic domain.
 
     0.717
SHJ45323.1
Penicillin-insensitive murein endopeptidase.
  
     0.710
SHI80440.1
Hypothetical protein.
       0.608
SHJ36587.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.577
SHJ20611.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.562
SHJ21019.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.562
SHJ27920.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.562
SHJ64454.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.562
SHJ36188.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.560
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.