STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI91763.1Citrate lyase subunit beta / citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (262 aa)    
Predicted Functional Partners:
SHK09271.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.858
SHI91796.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
 
 0.838
SHI91825.1
acyl-CoA dehydrogenase.
 
 
  0.833
SHJ36677.1
3-methylfumaryl-CoA hydratase.
 
 
 0.833
SHJ18295.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.815
SHK00728.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.815
SHK21515.1
Phosphate acetyltransferase.
  
 
 0.734
SHK21935.1
Phosphate butyryltransferase.
  
 
 0.734
SHK09185.1
Catechol 2,3-dioxygenase.
 
  
 0.626
SHI88894.1
3-methylcrotonyl-CoA carboxylase alpha subunit.
  
 
 0.617
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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