STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI93261.1Bacterioferritin; Iron-storage protein. (162 aa)    
Predicted Functional Partners:
SHI93225.1
BFD-like [2Fe-2S] binding domain-containing protein.
 
 
 0.979
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.865
SHI58626.1
Heme oxygenase.
     
 0.822
SHI79717.1
Golgi phosphoprotein 3 (GPP34).
   
  
 0.638
SHJ77553.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.638
SHJ93177.1
Golgi phosphoprotein 3 (GPP34).
   
  
 0.638
SHK21700.1
Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
   
 
 0.633
SHK33569.1
Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA).
   
 
 0.633
SHK44484.1
Copper-resistance protein, CopA family.
  
 
 0.633
SHI79781.1
Conserved domain-containing protein.
   
  
 0.567
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.