STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI99354.1PAS domain S-box-containing protein. (364 aa)    
Predicted Functional Partners:
SHK06373.1
PAS domain S-box-containing protein.
 
0.988
SHJ71198.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.986
SHJ84505.1
Hpt domain-containing protein.
   
 0.970
SHK01570.1
PAS domain S-box-containing protein.
 
 0.968
SHJ95795.1
PAS domain S-box-containing protein.
 
 0.963
SHJ80274.1
PAS domain S-box-containing protein.
 
 0.957
SHI58656.1
Bacteriophytochrome (light-regulated signal transduction histidine kinase).
 
 0.956
SHK36981.1
Signal transduction histidine kinase.
  
 0.956
SHJ07399.1
PAS domain S-box-containing protein.
 
 0.953
SHJ84532.1
Response regulator receiver domain-containing protein.
  
 0.953
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.