STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI99856.1Outer membrane protein (porin). (420 aa)    
Predicted Functional Partners:
SHK40954.1
Phospholipid-binding lipoprotein MlaA.
 
 
 
 0.919
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.914
SHJ85263.1
Phospholipid-binding lipoprotein MlaA.
   
 
 0.908
SHI32742.1
Vitamin B12 transporter.
    
 
 0.856
SHI78186.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
 
 0.796
SHJ28884.1
Hypothetical protein.
  
     0.763
SHK08963.1
Uncharacterized protein involved in outer membrane biogenesis.
  
     0.763
SHJ52275.1
O-antigen ligase.
  
     0.752
SHJ54229.1
Tripartite tricarboxylate transporter TctB family protein.
  
   
 0.742
SHI99897.1
Protein of unknown function.
 
   
 0.728
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.