STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ00098.1Chromosome partitioning protein, ParB family; Belongs to the ParB family. (278 aa)    
Predicted Functional Partners:
SHJ00131.1
Chromosome partitioning protein.
 
 
 0.988
rsmG
16S rRNA (guanine527-N7)-methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
 
  
 0.932
SHI92044.1
Hypothetical protein.
    
 
 0.912
SHK31405.1
Chromosome partitioning protein.
 
 
 0.899
SHJ41940.1
Plasmid segregation oscillating ATPase ParF.
 
 
 0.880
SHI79389.1
Chromosome partitioning protein.
 
 
 0.876
SHJ81579.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
   
 0.843
mnmE
tRNA modification GTPase; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
  
 0.841
SHI58142.1
Cellulose synthase operon protein YhjQ.
  
 
 0.747
SHK20267.1
Cellulose synthase operon protein YhjQ.
  
 
 0.747
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.