STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ01367.1Protein Atu4866. (130 aa)    
Predicted Functional Partners:
SHJ01329.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.816
SHI83501.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.779
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.758
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.647
SHJ18295.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.559
SHK00728.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.559
SHJ01296.1
AraC-type DNA-binding protein.
 
     0.520
SHJ84505.1
Hpt domain-containing protein.
     
 0.519
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.454
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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