STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ15411.1Predicted arabinose efflux permease, MFS family. (393 aa)    
Predicted Functional Partners:
SHJ15438.1
PRC-barrel domain-containing protein.
 
     0.922
SHK34737.1
ATP-binding cassette, subfamily B.
  
     0.698
SHJ64131.1
Hypothetical protein.
  
     0.633
SHJ15463.1
Branched-chain amino acid aminotransferase.
  
 
  0.585
SHK34776.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.545
SHK19671.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.522
SHK14519.1
Porin, OprB family.
  
     0.506
SHK13915.1
Predicted PurR-regulated permease PerM.
  
     0.492
SHK42374.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
  
     0.459
SHK30275.1
Fusaric acid resistance protein-like.
  
     0.458
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.