STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ17212.1Peptide/nickel transport system substrate-binding protein. (527 aa)    
Predicted Functional Partners:
SHJ57492.1
Peptide/nickel transport system permease protein.
 
  0.838
SHJ57523.1
Peptide/nickel transport system permease protein.
  
  0.828
SHJ45103.1
Peptide/nickel transport system permease protein.
 
  0.810
SHJ45129.1
Peptide/nickel transport system permease protein.
  
  0.783
SHJ17051.1
Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.678
SHJ17086.1
GntR family transcriptional regulator, histidine utilization repressor.
       0.678
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.678
hutH
Histidine ammonia-lyase.
       0.678
hutI
Imidazolonepropionase.
       0.678
SHJ16954.1
Polar amino acid transport system permease protein.
    
  0.616
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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