STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ21019.1Glyoxylase, beta-lactamase superfamily II. (262 aa)    
Predicted Functional Partners:
SHJ21055.1
3-hydroxyisobutyrate dehydrogenase.
  
    0.819
SHJ21091.1
4-carboxymuconolactone decarboxylase.
       0.773
SHJ22203.1
Thioredoxin reductase.
   
 0.772
SHJ05109.1
Acyl transferase domain-containing protein.
   
 0.697
SHK13415.1
Hypothetical protein.
  
     0.664
SHJ23386.1
Rhodanese-related sulfurtransferase.
 
 
 0.631
SHI70034.1
Rhodanese-related sulfurtransferase.
   
 0.592
SHK13445.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.578
SHI80380.1
Uncharacterized conserved protein YcbK, DUF882 family.
  
    0.562
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.559
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.