Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHI96530.1 | SHJ33840.1 | SAMN02745194_01433 | SAMN02745194_02324 | Hint domain-containing protein. | Carboxyl-terminal processing protease. | 0.556 |
SHJ06066.1 | SHJ33840.1 | SAMN02745194_01647 | SAMN02745194_02324 | PEP-CTERM protein-sorting domain-containing protein. | Carboxyl-terminal processing protease. | 0.556 |
SHJ14379.1 | SHJ33840.1 | SAMN02745194_01836 | SAMN02745194_02324 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Carboxyl-terminal processing protease. | 0.569 |
SHJ33765.1 | SHJ33840.1 | SAMN02745194_02321 | SAMN02745194_02324 | DNA processing protein. | Carboxyl-terminal processing protease. | 0.621 |
SHJ33765.1 | rnr | SAMN02745194_02321 | SAMN02745194_02323 | DNA processing protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.828 |
SHJ33765.1 | rpmG | SAMN02745194_02321 | SAMN02745194_02325 | DNA processing protein. | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.411 |
SHJ33765.1 | secD | SAMN02745194_02321 | SAMN02745194_04296 | DNA processing protein. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.475 |
SHJ33765.1 | topA | SAMN02745194_02321 | SAMN02745194_02322 | DNA processing protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.935 |
SHJ33840.1 | SHI96530.1 | SAMN02745194_02324 | SAMN02745194_01433 | Carboxyl-terminal processing protease. | Hint domain-containing protein. | 0.556 |
SHJ33840.1 | SHJ06066.1 | SAMN02745194_02324 | SAMN02745194_01647 | Carboxyl-terminal processing protease. | PEP-CTERM protein-sorting domain-containing protein. | 0.556 |
SHJ33840.1 | SHJ14379.1 | SAMN02745194_02324 | SAMN02745194_01836 | Carboxyl-terminal processing protease. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.569 |
SHJ33840.1 | SHJ33765.1 | SAMN02745194_02324 | SAMN02745194_02321 | Carboxyl-terminal processing protease. | DNA processing protein. | 0.621 |
SHJ33840.1 | SHJ69474.1 | SAMN02745194_02324 | SAMN02745194_03145 | Carboxyl-terminal processing protease. | Hypothetical protein. | 0.620 |
SHJ33840.1 | pheT | SAMN02745194_02324 | SAMN02745194_01291 | Carboxyl-terminal processing protease. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.615 |
SHJ33840.1 | rnr | SAMN02745194_02324 | SAMN02745194_02323 | Carboxyl-terminal processing protease. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.671 |
SHJ33840.1 | rpmG | SAMN02745194_02324 | SAMN02745194_02325 | Carboxyl-terminal processing protease. | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.624 |
SHJ33840.1 | secD | SAMN02745194_02324 | SAMN02745194_04296 | Carboxyl-terminal processing protease. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.644 |
SHJ33840.1 | topA | SAMN02745194_02324 | SAMN02745194_02322 | Carboxyl-terminal processing protease. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.679 |
SHJ69474.1 | SHJ33840.1 | SAMN02745194_03145 | SAMN02745194_02324 | Hypothetical protein. | Carboxyl-terminal processing protease. | 0.620 |
pheT | SHJ33840.1 | SAMN02745194_01291 | SAMN02745194_02324 | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Carboxyl-terminal processing protease. | 0.615 |
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