STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ39014.1Transcriptional regulator, IclR family. (250 aa)    
Predicted Functional Partners:
SHI83161.1
Transcriptional regulator, IclR family.
  
     0.770
SHK04658.1
Transcriptional regulator, IclR family.
  
     0.767
SHI69923.1
Transcriptional regulator, IclR family.
  
     0.765
SHI37012.1
Transcriptional regulator, IclR family.
  
     0.761
SHI67429.1
Transcriptional regulator, IclR family.
  
     0.736
SHK41885.1
Transcriptional regulator, IclR family.
  
     0.717
SHJ90271.1
DNA-binding transcriptional regulator, IclR family.
  
     0.678
SHJ78956.1
DNA-binding transcriptional regulator, IclR family.
  
     0.643
SHI98433.1
Transcriptional regulator, IclR family.
  
     0.641
SHK04879.1
Transcriptional regulator, IclR family.
  
     0.581
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.