STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ63421.1Hypothetical protein. (290 aa)    
Predicted Functional Partners:
SHJ63450.1
Glycosyl transferases group 1.
     0.970
SHJ63481.1
6-pyruvoyl-tetrahydropterin synthase.
 
     0.959
SHJ63513.1
Threonine dehydrogenase.
 
     0.959
SHJ63546.1
Riboflavin-specific deaminase C-terminal domain-containing protein.
 
     0.873
SHJ63382.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.815
SHJ07810.1
Methyltransferase, FkbM family.
 
     0.780
SHJ63601.1
Rod binding protein.
 
     0.593
SHJ81152.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
    
 0.564
SHJ08978.1
Hypothetical protein.
    
 
 0.551
SHJ81064.1
Maltooligosyltrehalose trehalohydrolase.
   
  0.537
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.