STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ63908.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
SHI81565.1
Putative transposase of IS4/5 family.
  
     0.694
SHK38906.1
Putative transposase of IS4/5 family.
  
     0.672
SHK00702.1
Hypothetical protein.
  
     0.642
SHI96755.1
Putative transposase of IS4/5 family.
  
     0.636
SHJ63950.1
Hypothetical protein.
       0.615
SHJ91698.1
Putative transposase of IS4/5 family.
  
     0.609
SHJ35264.1
Hypothetical protein.
  
     0.605
SHJ28884.1
Hypothetical protein.
  
     0.587
SHJ36704.1
Hypothetical protein.
  
     0.582
SHK03577.1
Protein of unknown function.
  
    0.537
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.