STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ80730.1TldD protein. (482 aa)    
Predicted Functional Partners:
SHJ98390.1
PmbA protein.
 
 
0.961
SHJ80703.1
PAS domain S-box-containing protein.
   
   0.824
ctaA
Cytochrome c oxidase assembly protein subunit 15; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
       0.816
SHJ80765.1
N-acetylglutamate synthase, GNAT family.
       0.785
SHJ80754.1
Hypothetical protein.
       0.773
SHJ80821.1
Methyl-accepting chemotaxis protein.
   
   0.575
SHJ80793.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
       0.545
SHJ80630.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
       0.536
SHJ80655.1
Dolichol-phosphate mannosyltransferase.
       0.508
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.