STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (335 aa)    
Predicted Functional Partners:
SHK19976.1
Aspartate kinase; Belongs to the aspartokinase family.
 
 
 0.989
SHJ67950.1
Homoserine dehydrogenase.
 
 0.969
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.956
SHJ84838.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
 
 0.895
SHJ98368.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
 
 0.855
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
 0.838
SHJ64005.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
  
 
 0.833
SHI41086.1
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
  
 
0.813
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
  
 0.810
SHI58956.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
 
 0.809
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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