STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ89220.1Peptide/nickel transport system permease protein. (315 aa)    
Predicted Functional Partners:
SHJ89198.1
Peptide/nickel transport system permease protein.
 
  0.973
SHJ89240.1
Peptide/nickel transport system substrate-binding protein.
  0.946
SHJ25465.1
Peptide/nickel transport system permease protein.
 
 
  0.919
SHJ45634.1
Peptide/nickel transport system permease protein.
 
  0.916
SHJ89342.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.902
SHJ17555.1
Peptide/nickel transport system permease protein.
 
  0.887
SHK41722.1
Peptide/nickel transport system permease protein.
 
  0.887
SHJ52150.1
Peptide/nickel transport system permease protein.
 
  0.886
SHK14253.1
Peptide/nickel transport system permease protein.
 
  0.884
SHJ77927.1
Peptide/nickel transport system permease protein.
 
 
  0.865
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.