STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ89298.1NAD dependent epimerase/dehydratase family protein. (310 aa)    
Predicted Functional Partners:
SHK07313.1
Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.847
SHK02157.1
Glycosyl transferases group 1.
    
 0.825
SHJ89267.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
   
   0.793
SHJ89319.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SHJ89342.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
SHJ89369.1
D-galactarolactone cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.771
SHJ89389.1
Transcriptional regulator, GntR family.
       0.768
SHI36645.1
CDP-paratose 2-epimerase.
 
 
 0.691
SHK01926.1
Glycosyl transferase family 2.
    
 0.658
SHI44083.1
Glycosyltransferase, GT2 family.
 
  
 0.633
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.