STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ91730.1Asp/Glu/hydantoin racemase. (244 aa)    
Predicted Functional Partners:
SHJ62915.1
Asp/Glu/hydantoin racemase.
  
  
 
0.836
SHJ63194.1
Allantoinase.
 
  
  0.830
SHJ27637.1
Hypothetical protein.
 
  
  0.820
SHJ91756.1
Hypothetical protein.
       0.788
SHI92990.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
  
  0.775
SHJ86359.1
Dihydropyrimidinase.
 
  
  0.632
SHI82487.1
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
  0.538
SHJ91786.1
Glutamate carboxypeptidase.
       0.535
SHJ63069.1
Predicted amidohydrolase.
 
     0.506
SHI34583.1
Dihydroorotase.
    
  0.500
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.