STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ93010.1Tripartite-type tricarboxylate transporter, receptor component TctC. (328 aa)    
Predicted Functional Partners:
SHJ54266.1
TctA family transporter.
 
    0.748
SHJ93041.1
Diaminopropionate ammonia-lyase.
       0.674
SHJ28774.1
Putative tricarboxylic transport membrane protein.
 
    0.606
SHJ93068.1
Hypothetical protein.
       0.556
SHJ54229.1
Tripartite tricarboxylate transporter TctB family protein.
  
    0.541
SHJ28804.1
Putative tricarboxylic transport membrane protein.
  
    0.450
SHJ93096.1
Glutamate carboxypeptidase.
       0.411
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.