STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK13445.1Pimeloyl-ACP methyl ester carboxylesterase. (286 aa)    
Predicted Functional Partners:
SHK13415.1
Hypothetical protein.
     0.973
SHJ05109.1
Acyl transferase domain-containing protein.
  
 0.958
SHI43685.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.895
SHK16982.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
   
 0.878
SHK13387.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
    
  0.795
SHK13298.1
Hypothetical protein.
   
   0.737
SHK13327.1
Acyl-CoA synthetase (NDP forming).
    
  0.710
SHK13358.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
    
  0.709
SHJ90177.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
  
  0.649
SHK13477.1
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.631
Your Current Organism:
Roseomonas rosea
NCBI taxonomy Id: 198092
Other names: CIP 107419, DSM 14916, Muricoccus roseus, Muricoccus roseus Kampfer et al. 2003, R. rosea, Roseomonas rosea (Kampfer et al. 2003) Sanchez-Porro et al. 2009, strain 173-96, strain 173/96
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