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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU09941.1Putative TonB-dependent receptor. (684 aa)    
Predicted Functional Partners:
AKU12541.1
Hypothetical protein.
 
     0.733
AKU13952.1
Hypothetical protein.
 
     0.731
AKU12041.1
Hypothetical protein.
  
  
 0.716
AKU13801.1
Hypothetical protein.
     
 0.706
AKU14325.1
Outer membrane efflux protein.
  
  
 0.683
AKU13965.1
Hypothetical protein.
  
  
 0.656
AKU10542.1
Hypothetical protein.
  
     0.618
AKU13586.1
Hypothetical protein.
  
     0.603
AKU14605.1
Porin Gram-negative type.
  
 
 0.601
AKU11662.1
Outer membrane protein OmpW.
     
 0.597
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.