Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU09941.1Putative TonB-dependent receptor. (684 aa)    
Predicted Functional Partners:
AKU12541.1
Hypothetical protein.
 
   
 0.733
AKU13952.1
Hypothetical protein.
 
   
 0.731
AKU10075.1
Putative lipoprotein.
  
  
  0.683
AKU12041.1
Hypothetical protein.
  
  
 0.671
AKU13965.1
Hypothetical protein.
  
  
 0.648
AKU11662.1
Outer membrane protein OmpW.
     
 0.637
AKU10542.1
Hypothetical protein.
  
     0.618
AKU14605.1
Porin Gram-negative type.
  
 
 0.614
AKU13586.1
Hypothetical protein.
  
     0.603
AKU13801.1
Hypothetical protein.
     
 0.602
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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