Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU10034.1Helix-turn-helix motif. (96 aa)    
Predicted Functional Partners:
AKU13862.1
Addiction module antitoxin.
 
 
 0.916
AKU14011.1
Hypothetical protein.
   
 0.899
AKU10095.1
Hypothetical protein.
 
  
 0.757
AKU14337.1
AbrB family transcriptional regulator.
 
  
 0.723
AKU11185.1
RelE/StbE family addiction module toxin.
    
 0.692
AKU11184.1
Damage inducible-like protein, anti-RelE antitoxin.
    
 0.676
AKU11401.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
    
 0.665
AKU14338.1
Hypothetical protein.
     
 0.653
AKU14491.1
Transcriptional regulator/antitoxin MazE.
     
 0.651
AKU11298.1
Transcriptional regulator, XRE family.
    
 0.645
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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