Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU10123.1Protein of unknown function (DUF4401) protein. (353 aa)    
Predicted Functional Partners:
AKU10124.1
Hypothetical protein.
 
     0.949
AKU10122.1
Hypothetical protein.
 
     0.913
AKU12600.1
Hypothetical protein.
  
     0.772
AKU12601.1
Hypothetical protein.
  
     0.772
AKU09933.1
Hypothetical protein.
  
     0.770
AKU11013.1
Hypothetical protein.
  
     0.768
AKU14215.1
Hypothetical protein.
  
     0.768
AKU13965.1
Hypothetical protein.
  
     0.767
AKU13298.1
Hypothetical protein.
  
     0.765
AKU11186.1
Hypothetical protein.
 
     0.764
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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