Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU10154.1Cytochrome c, class I. (104 aa)    
Predicted Functional Partners:
AKU13491.1
Blue (type 1) copper domain-containing protein.
    
 0.902
AKU10153.1
Two-component regulator propeller domain-containing protein.
 
   
 0.850
AKU10155.1
Hypothetical protein.
 
     0.808
AKU10156.1
Transcriptional regulator, Fis family.
       0.779
AKU12873.1
Hydrogen dehydrogenase, alpha subunit.
   
 
 0.760
AKU14480.1
Formate dehydrogenase, NAD(P) reducing, beta subunit.
   
 
 0.760
AKU10139.1
Quinol dehydrogenase periplasmic component.
  
 
 0.758
AKU10152.1
Two-component regulator propeller domain-containing protein.
 
   
 0.728
AKU10157.1
Histidine kinase.
 
     0.707
AKU10182.1
Cytochrome c, class I.
 
 
 0.687
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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