Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU10304.1Silent information regulator protein Sir2. (59 aa)    
Predicted Functional Partners:
AKU09973.1
Hypothetical protein.
 
 0.898
AKU10038.1
ATP-dependent DNA helicase, RecQ family.
  
 
 0.798
AKU12715.1
Histone deacetylase family protein.
    
 0.690
AKU13472.1
Hypothetical protein.
    
 0.690
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.644
AKU09971.1
Hypothetical protein.
     
  0.594
AKU14264.1
N6-adenine-specific DNA methyltransferase, N12 class.
   
    0.576
AKU11285.1
Putative dual specificity protein phosphatase.
  
 0.569
AKU13297.1
Hypothetical protein.
  
 0.556
AKU12765.1
WD-40 repeat protein.
  
 0.552
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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