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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU10410.1Lipopolysaccharide core biosynthesis protein. (262 aa)    
Predicted Functional Partners:
AKU10409.1
Lipopolysaccharide core biosynthesis protein.
 
     0.952
AKU10407.1
Hypothetical protein.
 
     0.949
AKU10411.1
Lipopolysaccharide core biosynthesis protein.
 
     0.946
AKU10412.1
Lipopolysaccharide kinase WaaP.
 
     0.946
AKU10413.1
Glucosyltransferase I.
 
     0.944
AKU10414.1
Heptosyltransferase I.
 
     0.881
AKU10406.1
Sulfatase family protein.
 
     0.847
AKU10415.1
ADP-heptose-LPS heptosyltransferase II.
 
     0.822
AKU10408.1
Hypothetical protein.
       0.785
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
       0.778
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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