Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU10620.1Nif-specific regulatory protein. (546 aa)    
Predicted Functional Partners:
AKU13667.1
Hypothetical protein.
 
 
 
 0.879
AKU10518.1
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.871
AKU14154.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.807
AKU13648.1
Two-component system, LuxR family, sensor histidine kinase.
   
 
 0.757
tdiS
Sensor protein TdiS.
   
 
 0.757
AKU10891.1
PAS/PAC sensor signal transduction histidine kinase.
   
 
 0.748
AKU12243.1
Hypothetical protein.
   
 
 0.748
AKU12770.1
PAS/PAC sensor signal transduction histidine kinase.
   
 
 0.748
AKU11477.1
Sensory transduction histidine kinase.
   
 
 0.599
AKU12063.1
Two-component system sensor-response regulator hybrid protein.
   
 
 0.599
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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