Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU10651.1SdiA-regulated. (311 aa)    
Predicted Functional Partners:
AKU10409.1
Lipopolysaccharide core biosynthesis protein.
 
   
 0.780
AKU10410.1
Lipopolysaccharide core biosynthesis protein.
  
     0.768
AKU10407.1
Hypothetical protein.
  
     0.765
AKU10412.1
Lipopolysaccharide kinase WaaP.
  
     0.762
AKU10650.1
Glycosyltransferase family protein.
 
   
 0.760
AKU10411.1
Lipopolysaccharide core biosynthesis protein.
  
     0.759
AKU10413.1
Glucosyltransferase I.
  
     0.739
AKU10081.1
SurA-like protein.
  
     0.691
AKU10397.1
Carbamoyltransferase.
 
     0.673
AKU10076.1
Hypothetical protein.
  
     0.670
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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