STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU10876.1Sigma-54 dependent response regulator. (477 aa)    
Predicted Functional Partners:
AKU10875.1
Sensory box sensor histidine kinase.
 
 0.992
AKU14154.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.780
fliE
Flagellar hook-basal body complex protein.
 
  
 0.740
AKU10873.1
Flagellar motor switch protein.
  
  
 0.709
AKU10874.1
Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.709
AKU10872.1
Flagellar assembly protein.
  
  
 0.661
AKU10871.1
Flagellar-specific ATP synthase.
  
  
 0.643
AKU10869.1
Flagellar hook-length control protein.
 
  
 0.600
AKU10867.1
Flagellar motor switch protein.
  
  
 0.559
AKU10868.1
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.540
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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