AKU10880.1 protein (Azoarcus sp. CIB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKU10880.1

Hypothetical protein. (387 aa)

Predicted Functional Partners:

AKU10858.1

0.962

AKU10870.1

0.950

ycgR

0.926

AKU10882.1

0.919

AKU10847.1

0.912

AKU10879.1

0.902

AKU10872.1

0.899

AKU10865.1

0.897

AKU10868.1

0.892

AKU10852.1

0.878

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU10847.1	AKU10852.1	AzCIB_0942	AzCIB_0947	Putative chaperon of flagellar synthesis.	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	0.915
AKU10847.1	AKU10858.1	AzCIB_0942	AzCIB_0953	Putative chaperon of flagellar synthesis.	Peptidoglycan hydrolase.	0.925
AKU10847.1	AKU10865.1	AzCIB_0942	AzCIB_0960	Putative chaperon of flagellar synthesis.	Flagellar biosynthesis protein.	0.879
AKU10847.1	AKU10868.1	AzCIB_0942	AzCIB_0963	Putative chaperon of flagellar synthesis.	Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.882
AKU10847.1	AKU10870.1	AzCIB_0942	AzCIB_0965	Putative chaperon of flagellar synthesis.	Flagellar protein.	0.856
AKU10847.1	AKU10872.1	AzCIB_0942	AzCIB_0967	Putative chaperon of flagellar synthesis.	Flagellar assembly protein.	0.663
AKU10847.1	AKU10880.1	AzCIB_0942	AzCIB_0975	Putative chaperon of flagellar synthesis.	Hypothetical protein.	0.912
AKU10847.1	AKU10882.1	AzCIB_0942	AzCIB_0977	Putative chaperon of flagellar synthesis.	Flagellar protein FliS.	0.906
AKU10847.1	ycgR	AzCIB_0942	AzCIB_0973	Putative chaperon of flagellar synthesis.	Hypothetical protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.	0.943
AKU10852.1	AKU10847.1	AzCIB_0947	AzCIB_0942	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Putative chaperon of flagellar synthesis.	0.915
AKU10852.1	AKU10858.1	AzCIB_0947	AzCIB_0953	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Peptidoglycan hydrolase.	0.988
AKU10852.1	AKU10865.1	AzCIB_0947	AzCIB_0960	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar biosynthesis protein.	0.951
AKU10852.1	AKU10868.1	AzCIB_0947	AzCIB_0963	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.	0.982
AKU10852.1	AKU10870.1	AzCIB_0947	AzCIB_0965	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar protein.	0.950
AKU10852.1	AKU10872.1	AzCIB_0947	AzCIB_0967	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar assembly protein.	0.961
AKU10852.1	AKU10879.1	AzCIB_0947	AzCIB_0974	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar related protein.	0.555
AKU10852.1	AKU10880.1	AzCIB_0947	AzCIB_0975	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Hypothetical protein.	0.878
AKU10852.1	AKU10882.1	AzCIB_0947	AzCIB_0977	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Flagellar protein FliS.	0.966
AKU10852.1	ycgR	AzCIB_0947	AzCIB_0973	Basal-body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.	Hypothetical protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.	0.631
AKU10858.1	AKU10847.1	AzCIB_0953	AzCIB_0942	Peptidoglycan hydrolase.	Putative chaperon of flagellar synthesis.	0.925