Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU11134.1Carboxypeptidase. (338 aa)    
Predicted Functional Partners:
AKU11135.1
Hydrolase or acyltransferase-like protein.
 
 
   0.955
AKU11133.1
Hypothetical protein.
       0.757
AKU10887.1
Dihydrolipoamide dehydrogenase.
   
  0.561
AKU11132.1
Hypothetical protein.
       0.561
AKU11759.1
2-oxoglutarate dehydrogenase E1 component.
  
  
  0.545
AKU11129.1
Hypothetical protein.
 
     0.406
AKU13709.1
Hypothetical protein.
 
     0.405
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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