STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU11142.1Putative LysR-type transcriptional regulator NahR; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
AKU11143.1
Gentisate 1,2-dioxygenase.
 
     0.675
AKU11145.1
Salicylate hydroxylase.
 
   
 0.670
AKU11146.1
Maleylpyruvate isomerase.
 
   
 0.482
AKU11144.1
Fumarylpyruvate hydrolase.
  
    0.446
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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