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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU11344.1NERD domain-containing protein. (542 aa)    
Predicted Functional Partners:
AKU11892.1
Hypothetical protein.
 
     0.577
rep
Hypothetical protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
 
  
 0.517
AKU14477.1
Hypothetical protein.
 
  
0.517
AKU11342.1
Putative transposase subunit.
 
     0.513
AKU13584.1
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
   
    0.491
AKU12764.1
IS4 family transposase.
  
  
 0.450
AKU11345.1
Transposase IS116/IS110/IS902 family protein.
       0.449
AKU11343.1
Transposase.
       0.446
AKU10038.1
ATP-dependent DNA helicase, RecQ family.
    
 0.425
AKU12763.1
IS4 family transposase.
  
  
 0.423
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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