Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU11376.1Hypothetical protein. (209 aa)    
Predicted Functional Partners:
AKU11377.1
Hypothetical protein.
 
     0.839
AKU11375.1
NADH:flavin oxidoreductase/NADH oxidase.
 
     0.803
AKU11378.1
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
AKU11366.1
DNA-binding protein with HTH domain-containing protein.
 
     0.722
AKU11439.1
Hypothetical protein.
 
     0.705
AKU11435.1
Hypothetical protein.
  
   
 0.704
AKU11434.1
MaoC domain-containing protein dehydratase.
  
     0.698
AKU11388.1
Luciferase-like monooxygenase superfamily protein.
  
     0.663
AKU11421.1
Hypothetical protein.
 
     0.663
AKU11402.1
LuxR family transcriptional regulator.
 
     0.640
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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