AKU11380.1 protein (Azoarcus sp. CIB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKU11380.1

Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family. (402 aa)

Predicted Functional Partners:

AKU11105.1

0.801

AKU11119.1

0.801

AKU13841.1

0.799

AKU11712.1

0.789

AKU10313.1

0.774

AKU11425.1

0.768

AKU11684.1

0.765

AKU11106.1

0.703

AKU11831.1

0.694

AKU10311.1

0.685

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU10311.1	AKU10313.1	AzCIB_0406	AzCIB_0408	4-hydroxybenzoyl-CoA reductase, beta subunit.	4-hydroxybenzoyl-CoA reductase, gamma subunit.	0.998
AKU10311.1	AKU11105.1	AzCIB_0406	AzCIB_1200	4-hydroxybenzoyl-CoA reductase, beta subunit.	Isoquinoline 1-oxidoreductase, alpha subunit.	0.714
AKU10311.1	AKU11106.1	AzCIB_0406	AzCIB_1201	4-hydroxybenzoyl-CoA reductase, beta subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.527
AKU10311.1	AKU11119.1	AzCIB_0406	AzCIB_1214	4-hydroxybenzoyl-CoA reductase, beta subunit.	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein.	0.708
AKU10311.1	AKU11380.1	AzCIB_0406	AzCIB_1479	4-hydroxybenzoyl-CoA reductase, beta subunit.	Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family.	0.685
AKU10311.1	AKU11425.1	AzCIB_0406	AzCIB_1524	4-hydroxybenzoyl-CoA reductase, beta subunit.	Aldehyde oxidase small subunit.	0.941
AKU10311.1	AKU11684.1	AzCIB_0406	AzCIB_1789	4-hydroxybenzoyl-CoA reductase, beta subunit.	Small Fe/S-containing subunit of molybdenum enzyme.	0.881
AKU10311.1	AKU11712.1	AzCIB_0406	AzCIB_1817	4-hydroxybenzoyl-CoA reductase, beta subunit.	4-hydroxybenzoyl-CoA reductase subunit gamma.	0.973
AKU10311.1	AKU11831.1	AzCIB_0406	AzCIB_1936	4-hydroxybenzoyl-CoA reductase, beta subunit.	Hypothetical protein.	0.504
AKU10311.1	AKU13841.1	AzCIB_0406	AzCIB_3948	4-hydroxybenzoyl-CoA reductase, beta subunit.	Isoquinoline 1-oxidoreductase, alpha subunit.	0.694
AKU10313.1	AKU10311.1	AzCIB_0408	AzCIB_0406	4-hydroxybenzoyl-CoA reductase, gamma subunit.	4-hydroxybenzoyl-CoA reductase, beta subunit.	0.998
AKU10313.1	AKU11106.1	AzCIB_0408	AzCIB_1201	4-hydroxybenzoyl-CoA reductase, gamma subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.669
AKU10313.1	AKU11380.1	AzCIB_0408	AzCIB_1479	4-hydroxybenzoyl-CoA reductase, gamma subunit.	Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family.	0.774
AKU10313.1	AKU11831.1	AzCIB_0408	AzCIB_1936	4-hydroxybenzoyl-CoA reductase, gamma subunit.	Hypothetical protein.	0.586
AKU11105.1	AKU10311.1	AzCIB_1200	AzCIB_0406	Isoquinoline 1-oxidoreductase, alpha subunit.	4-hydroxybenzoyl-CoA reductase, beta subunit.	0.714
AKU11105.1	AKU11106.1	AzCIB_1200	AzCIB_1201	Isoquinoline 1-oxidoreductase, alpha subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.978
AKU11105.1	AKU11380.1	AzCIB_1200	AzCIB_1479	Isoquinoline 1-oxidoreductase, alpha subunit.	Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family.	0.801
AKU11105.1	AKU11831.1	AzCIB_1200	AzCIB_1936	Isoquinoline 1-oxidoreductase, alpha subunit.	Hypothetical protein.	0.705
AKU11106.1	AKU10311.1	AzCIB_1201	AzCIB_0406	Isoquinoline 1-oxidoreductase, beta subunit.	4-hydroxybenzoyl-CoA reductase, beta subunit.	0.527
AKU11106.1	AKU10313.1	AzCIB_1201	AzCIB_0408	Isoquinoline 1-oxidoreductase, beta subunit.	4-hydroxybenzoyl-CoA reductase, gamma subunit.	0.669