Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU11391.1acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family. (467 aa)    
Predicted Functional Partners:
AKU11393.1
Hypothetical protein.
 
     0.938
AKU11390.1
Hypothetical protein.
 
     0.916
AKU11392.1
Putative O-succinylbenzoate--CoA ligase.
 
   
 0.881
AKU11412.1
Formyl-CoA transferase; Belongs to the CoA-transferase III family.
  
     0.773
bbsE
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsE; Belongs to the CoA-transferase III family.
  
     0.770
AKU11686.1
CoA-transferase protein; Belongs to the CoA-transferase III family.
  
     0.768
AKU11394.1
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
    
0.700
AKU11389.1
Hypothetical protein.
 
 
 0.686
AKU11427.1
Hypothetical protein.
  
    0.681
AKU11435.1
Hypothetical protein.
 
 
 0.543
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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