STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU11392.1Putative O-succinylbenzoate--CoA ligase. (504 aa)    
Predicted Functional Partners:
AKU11393.1
Hypothetical protein.
 
     0.937
AKU12943.1
acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase).
  
  
 
0.921
AKU11390.1
Hypothetical protein.
 
     0.916
AKU13963.1
Long-chain acyl-CoA synthetase.
  
 
0.911
AKU11391.1
acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
   
 0.881
AKU11427.1
Hypothetical protein.
 
 
 
 0.704
AKU10916.1
AMP-dependent synthetase and ligase.
  
 0.642
AKU11389.1
Hypothetical protein.
 
 
 0.639
AKU11394.1
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
   
 0.631
AKU11373.1
Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase.
 
 
 0.593
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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