Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKU11450.1Protein tyrosine/serine phosphatase. (194 aa)    
Predicted Functional Partners:
AKU11451.1
Protein tyrosine/serine phosphatase.
      0.885
AKU12877.1
NADH dehydrogenase subunit M.
    
 
 0.771
AKU13391.1
Hypothetical protein.
   
 
 0.757
AKU11452.1
Hypothetical protein.
       0.428
AKU11856.1
Sulfate transporter.
   
 
 0.415
AKU12220.1
Sulfate transporter.
   
 
 0.415
AKU12965.1
Sulfate permease MFS superfamily.
   
 
 0.415
AKU13093.1
Sulfate transporter.
   
 
 0.415
AKU11449.1
Hypothetical protein.
       0.412
AKU12888.1
NADH dehydrogenase subunit B.
    
   0.411
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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