Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU11558.1Exopolysaccharide biosynthesis protein. (362 aa)    
Predicted Functional Partners:
AKU13374.1
Hypothetical protein.
 
     0.718
AKU10038.1
ATP-dependent DNA helicase, RecQ family.
  
 
 0.669
AKU11559.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
   
 0.629
AKU13360.1
Hypothetical protein.
  
     0.576
AKU12610.1
Type I secretion protein.
 
     0.547
AKU13359.1
FAD dependent oxidoreductase family protein.
  
  
  0.537
AKU12609.1
Putative prolyl cis-trans isomerase.
 
   0.533
AKU11755.1
ATP-dependent DNA helicase.
  
 0.511
AKU12520.1
Hypothetical protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.508
AKU12611.1
Hypothetical protein.
 
   
 0.491
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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